3D Volume-Viewer and aicsimageio
To view ome.tiff as 3D in web browser
-
Front-end app: volume-viewer which consumes:
- atlas.json & images of ome.tiff
- Create atlas.json & images using aicsimageioprocessing
python aicsimageprocessing\aicsimageprocessing\bin\make_atlas.py .\AICS-7_0_1.ome.tif .
atlas.json example
{
"width": 314,
"height": 508,
"channels": 9,
"channel_names": [
"DRAQ5",
"EGFP",
"Hoechst 33258",
"TL Brightfield",
"SEG_STRUCT",
"SEG_Memb",
"SEG_DNA",
"CON_Memb",
"CON_DNA"
],
"rows": 6,
"cols": 9,
"tiles": 51,
"tile_width": 227,
"tile_height": 341,
"atlas_width": 2043,
"atlas_height": 2046,
"pixel_size_x": 0.065,
"pixel_size_y": 0.065,
"pixel_size_z": 0.29,
"images": [
{
"name": "AICS-7_0_1.ome_atlas_0.png",
"channels": [0,1,2]
},
{
"name": "AICS-7_0_1.ome_atlas_1.png",
"channels": [3,4,5]
},
{
"name": "AICS-7_0_1.ome_atlas_2.png",
"channels": [6,7,8]
}
],
"name": "AICS-7_0_1.ome"
}
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